Add Vercel configuration for rewrites and build settings

2025-12-17 17:47:45 +08:00
parent 072524e303
commit 0d31d42de4
32 changed files with 7435 additions and 289 deletions
@@ -0,0 +1,28 @@
+#! /bin/bash
+
+FS_LR=7
+
+if [ "$#" -ne 3 ]; then
+    echo "Usage: $0 <reliable_seq> <less_reliable_seq> <stem>"
+    echo "Perform MACSE alignment on given sequences"
+    exit 1
+fi
+
+seq=$1
+seq_lr=$2
+stem=$3
+
+{
+    echo "Command:"
+    echo "macse -prog alignSequences -seq $seq -seq_lr ${seq_lr}"
+    echo "      -out_NT ${stem}.nal -out_AA ${stem}.pal"
+    echo "      -optim 2 -max_refine_iter 3 -local_realign_init 0.2 -fs_lr $FS_LR"
+} >alignSequences.log
+macse -prog alignSequences \
+    -seq "$seq" -seq_lr "${seq_lr}" \
+    -out_NT "$stem".nal -out_AA "$stem".pal \
+    -optim 2 \
+    -max_refine_iter 3 \
+    -local_realign_init 0.2 \
+    -fs_lr $FS_LR \
+    >>alignSequences.log 2>&1