diff --git a/.gitignore b/.gitignore
index d884465..d07b92c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -19,9 +19,9 @@
 11.reference_v2/*
 12.orthofinder/*
 98.results/*
-99.scripts*/bucky
-99.scripts*/phyparts
-99.scripts*/bpp
+99.scripts*/bucky/
+99.scripts*/phyparts/
+99.scripts*/bpp/
 run.status.json
 !*/_description.md
 tmp/
diff --git a/99.scripts_v2/bucky b/99.scripts_v2/bucky
deleted file mode 160000
index 9228d7c..0000000
--- a/99.scripts_v2/bucky
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit 9228d7c9446e619df6fd609c3f48d74472b50c96