20251125

2025-11-25 00:28:51 +08:00
commit eb3f16c30e
406 changed files with 91653 additions and 0 deletions
@@ -0,0 +1,50 @@
+#!/usr/bin/env python
+
+import sys, os, re
+
+
+
+def main():
+
+    usage = "\n\n\tusage: {} STAR.Log.final.out [STAR.Log.final.out ...]\n\n".format(sys.argv[0])
+    if len(sys.argv) < 2:
+        exit(usage)
+
+    tokens = ['sample_name']
+    
+    processed_first = False
+    files = sys.argv[1:]
+
+    for log_filename in files:
+
+        token_to_val = { 'sample_name' : log_filename }
+        
+        with open(log_filename) as fh:
+            for line in fh:
+                line = line.rstrip()
+                vals = line.split("|")
+                if len(vals) != 2:
+                    continue
+                key = vals[0].strip()
+                val = vals[1].strip()
+                if not processed_first:
+                    tokens.append(key)
+
+                token_to_val[key] = val
+
+        if not processed_first:
+            # print header
+            print("\t".join(tokens))
+            processed_first = True
+
+        
+        vals = [token_to_val[x] for x in tokens]
+        print("\t".join(vals))
+    
+
+    sys.exit(0)
+
+
+
+if __name__=='__main__':
+    main()