20251125

2025-11-25 00:28:51 +08:00
commit eb3f16c30e
406 changed files with 91653 additions and 0 deletions
@@ -0,0 +1,34 @@
+#!/usr/bin/env perl
+
+use strict;
+use warnings;
+
+my $usage = "usage: $0 bfly_graph_out_list.file  bfly_jar\n\n";
+
+my $bfly_graph_list_file = $ARGV[0] or die $usage;
+my $bfly_jar = $ARGV[1] or die $usage;
+
+main: {
+
+    open (my $fh, $bfly_graph_list_file) or die $!;
+    while (<$fh>) {
+        chomp;
+        my $graph_out_file = $_;
+
+        $graph_out_file =~ s/\.out$//;
+
+        unless (-s "$graph_out_file.reads") {
+            print STDERR "WARNING - missing $graph_out_file.reads file.... skipping this one.\n";
+            next;
+        }
+        
+        my $cmd = "java -Xmx10G -Xms1G  -XX:ParallelGCThreads=2  -jar $bfly_jar -N 100000 -L 200 -F 500 -C $graph_out_file --path_reinforcement_distance=75 ";
+                
+        print "$cmd\n";
+    }
+    close $fh;
+
+
+    exit(0);
+}
+