20251125

2025-11-25 00:28:51 +08:00
commit eb3f16c30e
406 changed files with 91653 additions and 0 deletions
@@ -0,0 +1,38 @@
+#!/usr/bin/env perl
+
+use strict;
+use warnings;
+
+use FindBin;
+use lib ("$FindBin::RealBin/../../PerlLib");
+use Fasta_reader;
+use Nuc_translator;
+
+
+my $usage = "\nn\\tusage: $0 nucFasta  \n\n";
+
+my $fasta_file = $ARGV[0] or die $usage;
+
+main: {
+	my $fasta_reader = new Fasta_reader($fasta_file);
+	while (my $seq_obj = $fasta_reader->next()) {
+		
+		my $accession = $seq_obj->get_accession();
+		my $sequence = $seq_obj->get_sequence();
+		my $header = $seq_obj->get_header();
+		
+		for my $frame (1..6) {
+            my $translation = &translate_sequence($sequence, $frame);
+            
+            $translation =~ s/(\S{60})/$1\n/g;
+            chomp $translation;
+            
+            print ">$accession.F${frame}_trans $header\n$translation\n";
+        }
+    }
+	
+	exit(0);
+}
+
+
+