20251125

2025-11-25 00:28:51 +08:00
commit eb3f16c30e
406 changed files with 91653 additions and 0 deletions
@@ -0,0 +1,11 @@
+#! /usr/bin/env bash
+mkdir -p treeshrink
+for i in trimed_nal/*.trimed.fa; do
+    j=$(basename "$i")
+    mkdir -p treeshrink/"${j/.trimed.fa/}"
+    cd treeshrink/"${j/.trimed.fa/}" || exit 1
+    ln -s ../../fasttree/"${j/.trimed.fa/.tree}" input.tree
+    ln -s ../../"$i" input.fasta
+    cd ../../
+done
+run_treeshrink.py -i treeshrink/ -t input.tree -a input.fasta > treeshrink.log