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99.scripts/workflow/phylogeny_reconstruction/02.raxml_per_gene.sh

@@ -0,0 +1,9 @@
+#! /usr/bin/env bash
+mkdir -p raxml_ng
+echo -n > raxml_ng.cmds
+for i in modeltests/*.modeltest.out ; do
+    j=$(basename "$i")
+    cmd=$(grep "raxml-ng" "$i" | tail -n 1 | sed 's/> //')
+    echo "$cmd --all --bs-trees 1000 --outgroup Zju --redo --threads 4 --seed 12345 --prefix raxml_ng/${j/.modeltest.out/} > /dev/null" >> raxml_ng.cmds
+done
+xargs -t -P 3 -I cmd -a raxml_ng.cmds bash -c "cmd"