20251125

2025-11-25 00:28:51 +08:00
commit eb3f16c30e
406 changed files with 91653 additions and 0 deletions
@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+mkdir -p ../mbsum_out
+echo -n "" > ../mbsum.log
+for i in *.nex.tar.gz; do
+    base=$(basename "$i" .nex.tar.gz)
+    echo "Processing ${base}" >> ../mbsum.log
+    mkdir -p "${base}"
+    tar -xzf "$i" -C "${base}"
+    ## skip Average standard deviation of split frequencies > 0.01
+    dsf=$(awk '/Average standard deviation of split frequencies:/ {out=$7} END{print out+0}' "${base}"/*.nex.log 2>/dev/null)
+    if awk -v d="$dsf" 'BEGIN{if (d >= 0.01) exit 0; exit 1}'; then
+        echo "Skipping ${base} due to high DSF: ${dsf}" >> ../mbsum.log
+        continue
+    else
+        mbsum "${base}"/*.t -n 1000 -o ../mbsum_out/"${base}".in >> ../mbsum.log 2>&1
+    fi
+    rm -rf "${base}"
+    echo "Completed ${base}" >> ../mbsum.log
+done
+echo "All done!"