#! /usr/bin/env bash
mkdir -p hmms
echo -n > hmmbuild.cmds
for i in msa/*.fa ; do
    j=$(basename "$i")
    echo "hmmbuild -o hmms/${j}.hmmbuild.out --amino hmms/${j}.hmm $i" >> hmmbuild.cmds
done
xargs -t -P 8 -I cmd -a hmmbuild.cmds bash -c "cmd"