#! /usr/bin/env bash
mkdir -p hmmsearch
echo -n > hmmsearch.cmds
for i in hmms/*.hmm ; do
    j=$(basename "$i")
    echo "hmmsearch --tblout hmmsearch/${j}search.tblout $i ../../01.reference/Zju.pep.fa > hmmsearch/${j}search.rawout" >> hmmsearch.cmds
done
xargs -t -P 8 -I cmd -a hmmsearch.cmds bash -c "cmd"