#! /usr/bin/env bash
mkdir -p raxml_ng
echo -n > raxml_ng.cmds
for i in modeltests/*.modeltest.out ; do
    j=$(basename "$i")
    cmd=$(grep "raxml-ng" "$i" | tail -n 1 | sed 's/> //')
    echo "$cmd --all --bs-trees 1000 --outgroup Zju --redo --threads 4 --seed 12345 --prefix raxml_ng/${j/.modeltest.out/} > /dev/null" >> raxml_ng.cmds
done
xargs -t -P 3 -I cmd -a raxml_ng.cmds bash -c "cmd"