#!/usr/bin/env bash

mkdir -p ../mbsum_out
echo -n "" > ../mbsum.log
for i in *.nex.tar.gz; do
    base=$(basename "$i" .nex.tar.gz)
    echo "Processing ${base}" >> ../mbsum.log
    mkdir -p "${base}"
    tar -xzf "$i" -C "${base}"
    ## skip Average standard deviation of split frequencies > 0.01
    dsf=$(awk '/Average standard deviation of split frequencies:/ {out=$7} END{print out+0}' "${base}"/*.nex.log 2>/dev/null)
    if awk -v d="$dsf" 'BEGIN{if (d >= 0.01) exit 0; exit 1}'; then
        echo "Skipping ${base} due to high DSF: ${dsf}" >> ../mbsum.log
        continue
    else
        mbsum "${base}"/*.t -n 1000 -o ../mbsum_out/"${base}".in >> ../mbsum.log 2>&1
    fi
    rm -rf "${base}"
    echo "Completed ${base}" >> ../mbsum.log
done
echo "All done!"