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tests
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ExitTester.jar
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GG_partitioned_trinity_aggregator.pl
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SAM_coordSorted_fragment_Read_coverage_writer.pl
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SAM_coordSorted_fragment_coverage_writer2.pl
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SAM_extract_properly_mapped_pairs.pl
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SAM_extract_uniquely_mapped_reads.pl
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SAM_filter_out_unmapped_reads.pl
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SAM_ordered_pair_jaccard.pl
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SAM_set_transcribed_orient_info.pl
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SAM_strand_separator.pl
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SAM_to_frag_coords.pl
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add_LR_reads_to_iworm_bundle.pl
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annotate_chrysalis_welds_with_iworm_names.pl
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batch_cmds.pl
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bowtie2_wrapper.pl
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define_SAM_coverage_partitions2.pl
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define_coverage_partitions.pl
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eXpress_trans_to_gene_results.pl
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ensure_coord_sorted_sam.pl
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extract_reads_per_partition.pl
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fastQ_to_fastA.pl
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fastQ_to_tab.pl
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fasta_find_duplicates.pl
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fasta_to_tab.pl
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filter_iworm_by_min_length_or_cov.pl
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filter_transcripts_require_min_cov.pl
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fragment_coverage_writer.pl
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get_Trinity_gene_to_trans_map.pl
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inchworm_transcript_splitter.pl
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iworm_LR_to_scaff_pairs.pl
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jaccard_fasta_clipper.pl
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jaccard_wig_clipper.pl
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join_partitions_within_range.pl
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kallisto_trans_to_gene_results.pl
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merge_pair_and_LR_scaff_links.pl
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nbkc_merge_left_right_stats.pl
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nbkc_normalize.pl
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ordered_fragment_coords_to_jaccard.pl
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outfmt6_add_percent_match_length.pl
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partition_chrysalis_graphs_n_reads.pl
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partitioned_trinity_aggregator.pl
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plugin_install_tests.sh
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prep_rnaseq_alignments_for_genome_assisted_assembly.pl
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print_butterfly_assemblies.pl
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process_GMAP_alignments_gff3_chimeras_ok.pl
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revcomp_fasta.pl
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run_TMM_scale_matrix.pl
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run_UpperQuartileNormalization_matrix.Rscript
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run_UpperQuartileNormalization_matrix.pl
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salmon_runner.pl
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salmon_trans_to_gene_results.pl
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scaffold_iworm_contigs.pl
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segment_GFF_partitions.pl
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trinity_install_tests.sh
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trinity_installer.py
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wig_clip_to_bed.pl
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write_partitioned_trinity_cmds.pl
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