22 lines
773 B
Bash
Executable File
22 lines
773 B
Bash
Executable File
#!/usr/bin/env bash
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mkdir -p ../mbsum_out
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echo -n "" > ../mbsum.log
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for i in *.nex.tar.gz; do
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base=$(basename "$i" .nex.tar.gz)
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echo "Processing ${base}" >> ../mbsum.log
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mkdir -p "${base}"
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tar -xzf "$i" -C "${base}"
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## skip Average standard deviation of split frequencies > 0.01
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dsf=$(awk '/Average standard deviation of split frequencies:/ {out=$7} END{print out+0}' "${base}"/*.nex.log 2>/dev/null)
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if awk -v d="$dsf" 'BEGIN{if (d >= 0.01) exit 0; exit 1}'; then
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echo "Skipping ${base} due to high DSF: ${dsf}" >> ../mbsum.log
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continue
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else
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mbsum "${base}"/*.t -n 1000 -o ../mbsum_out/"${base}".in >> ../mbsum.log 2>&1
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fi
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rm -rf "${base}"
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echo "Completed ${base}" >> ../mbsum.log
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done
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echo "All done!"
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