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#! /usr/bin/env bash
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mkdir -p fasttree
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echo -n > fasttree.cmds
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for i in trimed_nal/*.trimed.fa ;do
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j=$(basename "$i")
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echo "FastTree -nt -gtr -quiet $i > fasttree/${j/.trimed.fa/.tree}" >> fasttree.cmds
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done
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xargs -t -P 8 -I cmd -a fasttree.cmds bash -c "cmd"
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