agent
e467d67723
- Created `mbblock.txt` for MrBayes configuration. - Implemented `mrbayes.sh` to convert FASTA to Nexus and run MrBayes. - Developed `raxml.sh` to run modeltest-ng and raxml-ng on alignments. - Added `04.filter_ogs.sh` to filter orthologous groups based on taxon count and sequence length. - Implemented `01.run_mrbayes.sh` to execute MrBayes for multiple FASTA files. - Created `02.mbsum.sh` to summarize MrBayes output while skipping high DSF analyses. - Developed `03.run_raxml.sh` to run raxml-ng on filtered alignments.
22 lines
373 B
Plaintext
22 lines
373 B
Plaintext
# pixi environments
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.pixi/*
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!.pixi/config.toml
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.pueue/*
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00.rawdata/*
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01.reference/*
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02.mapping_assembly/*
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03.denovo_assembly/*
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04.cds_prediction/*
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05.reduce_redundancy/*
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05.orthology_inference/*
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06.phylogeny_reconstruction/*
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06.phylogenetic_analysis/*
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06.gene_trees/*
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10.plastid/*
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98.results/*
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99.scripts/bucky/
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99.scripts/phyparts/
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run.status.json
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!*/_description.md
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tmp/
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