biyelunwen/99.scripts/trinity_utils/util/misc/strip_fasta_header.pl

29 lines
442 B
Perl

#!/usr/bin/env perl
use strict;
use warnings;
use Carp;
use FindBin;
use lib ("$FindBin::RealBin/../../PerlLib");
use Fasta_reader;
my $usage = "usage: $0 file.fasta\n\n";
my $fasta_file = $ARGV[0] or die $usage;
main: {
my $fasta_reader = new Fasta_reader($fasta_file);
while (my $seq_obj = $fasta_reader->next()) {
my $sequence = $seq_obj->get_sequence();
print ">\n$sequence\n";
}
exit(0);
}