9 lines
288 B
Bash
Executable File
9 lines
288 B
Bash
Executable File
#! /usr/bin/env bash
|
|
mkdir -p trimed_nal
|
|
echo -n > trimal.cmds
|
|
for i in cds_aln/*.nal ;do
|
|
j=$(basename "$i")
|
|
echo "trimal -in $i -out trimed_nal/${j/.nal/.trimed.fa} -automated1 -resoverlap 0.5 -seqoverlap 50" >> trimal.cmds
|
|
done
|
|
xargs -t -P 4 -I cmd -a trimal.cmds bash -c "cmd"
|