9 lines
232 B
Bash
Executable File
9 lines
232 B
Bash
Executable File
#! /usr/bin/env bash
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mkdir -p pep_aln
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echo -n > mafft.cmds
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for i in raw_ogs/pep/*.fa; do
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j=$(basename "$i")
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echo "linsi --quiet $i > pep_aln/${j/.fa/.pal}" >> mafft.cmds
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done
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xargs -t -P 8 -I cmd -a mafft.cmds bash -c "cmd"
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