Add MCMCtree workflow and SNaQ analysis scripts

- Updated `pixi.toml` to include new R package dependencies for MCMCtree workflow. - Modified markdown file to remove unnecessary simulation data discussion. - Introduced `.lintr` configuration for linting R scripts. - Created `mcmctree.ctl` control file for MCMCtree analysis. - Developed `mcmctree_workflow.r` script to orchestrate MCMCtree analysis with model testing and ESS checks. - Added `06.snaq.jl` script for SNaQ analysis with plotting capabilities. - Implemented `07.mcmctree.sh` bash script to run MCMCtree on multiple alignments in parallel.
2026-01-18 13:26:16 +08:00
parent 316017a575
commit 7f4e888e6a
11 changed files with 1068 additions and 23 deletions
@@ -59,7 +59,6 @@ title: 方法验证不足
  - 讨论方法的**适用范围与局限性**（如是否适用于大规模物种？能否处理多次introgression？）。
 - **解决方案：**
  - ==bpp模拟数据实验==
-  - ==添加其他真实数据集模拟（蛇）==

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