7f4e888e6a
- Updated `pixi.toml` to include new R package dependencies for MCMCtree workflow. - Modified markdown file to remove unnecessary simulation data discussion. - Introduced `.lintr` configuration for linting R scripts. - Created `mcmctree.ctl` control file for MCMCtree analysis. - Developed `mcmctree_workflow.r` script to orchestrate MCMCtree analysis with model testing and ESS checks. - Added `06.snaq.jl` script for SNaQ analysis with plotting capabilities. - Implemented `07.mcmctree.sh` bash script to run MCMCtree on multiple alignments in parallel. |
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| .vscode | ||
| 00.rawdata | ||
| 98.results | ||
| 99.scripts | ||
| slides | ||
| .envrc | ||
| .gitattributes | ||
| .gitignore | ||
| .lintr | ||
| .pueue.yml | ||
| pixi.lock | ||
| pixi.toml | ||