- Updated `pixi.toml` to include new R package dependencies for MCMCtree workflow. - Modified markdown file to remove unnecessary simulation data discussion. - Introduced `.lintr` configuration for linting R scripts. - Created `mcmctree.ctl` control file for MCMCtree analysis. - Developed `mcmctree_workflow.r` script to orchestrate MCMCtree analysis with model testing and ESS checks. - Added `06.snaq.jl` script for SNaQ analysis with plotting capabilities. - Implemented `07.mcmctree.sh` bash script to run MCMCtree on multiple alignments in parallel.
5 lines
155 B
Plaintext
5 lines
155 B
Plaintext
linters: linters_with_defaults(
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line_length_linter(80),
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commented_code_linter = NULL,
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indentation_linter(4, hanging_indent_style = "never")
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) |