biyelunwen

T

agent e467d67723 Add scripts for phylogenetic analysis using MrBayes and RAxML

- Created `mbblock.txt` for MrBayes configuration.
- Implemented `mrbayes.sh` to convert FASTA to Nexus and run MrBayes.
- Developed `raxml.sh` to run modeltest-ng and raxml-ng on alignments.
- Added `04.filter_ogs.sh` to filter orthologous groups based on taxon count and sequence length.
- Implemented `01.run_mrbayes.sh` to execute MrBayes for multiple FASTA files.
- Created `02.mbsum.sh` to summarize MrBayes output while skipping high DSF analyses.
- Developed `03.run_raxml.sh` to run raxml-ng on filtered alignments.

2025-12-20 23:33:05 +08:00

.vscode

20251125

2025-11-25 00:28:51 +08:00

00.rawdata

20251213

2025-12-13 17:57:57 +08:00

98.results

Add Vercel configuration for rewrites and build settings

2025-12-17 17:47:45 +08:00

99.scripts

Add scripts for phylogenetic analysis using MrBayes and RAxML