38 lines
626 B
Perl
38 lines
626 B
Perl
#!/usr/bin/env perl
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use strict;
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use warnings;
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use FindBin;
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use lib ("$FindBin::Bin/../../PerlLib");
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use Fasta_reader;
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my $usage = "usage: $0 [multiFastaFile]\n\n";
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if (defined($ARGV[0]) && ($ARGV[0] eq "-h" || $ARGV[0] eq "--help")) {
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die $usage;
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}
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my $input = $ARGV[0] || *STDIN{IO};
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unless (-f $input || ref $input eq 'IO::Handle') {
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die "Error, input not established.";
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}
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main: {
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my $fasta_reader = new Fasta_reader($input);
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while (my $seq_obj = $fasta_reader->next()) {
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my $sequence = $seq_obj->get_sequence();
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my $header = $seq_obj->get_header();
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print "$header\t$sequence\n";
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}
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exit(0);
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}
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