biyelunwen

Commit Graph

Author	SHA1	Message	Date
IvisTang	316017a575	更新脚本和配置，修复 BUCKy 版本检查逻辑，调整 RAxML 脚本参数，增加 cairosvg 依赖，并更新 pixi.lock 文件以反映新依赖。	2025-12-24 09:00:15 +08:00
IvisTang	e467d67723	Add scripts for phylogenetic analysis using MrBayes and RAxML - Created `mbblock.txt` for MrBayes configuration. - Implemented `mrbayes.sh` to convert FASTA to Nexus and run MrBayes. - Developed `raxml.sh` to run modeltest-ng and raxml-ng on alignments. - Added `04.filter_ogs.sh` to filter orthologous groups based on taxon count and sequence length. - Implemented `01.run_mrbayes.sh` to execute MrBayes for multiple FASTA files. - Created `02.mbsum.sh` to summarize MrBayes output while skipping high DSF analyses. - Developed `03.run_raxml.sh` to run raxml-ng on filtered alignments.	2025-12-20 23:33:05 +08:00
IvisTang	dba4833905	更新 .gitignore，添加 06.gene_trees 目录；重构 macse.sh 脚本，移除 fs_lr 参数；删除多个不再使用的脚本；添加 check_frameshift.py 和 get_og_seqs.py 脚本以处理阅读框移位和提取单拷贝OG序列；更新 pixi.toml 和 pixi.lock 文件以添加 paml 依赖。	2025-12-20 01:57:25 +08:00
IvisTang	e8ba2ed962	更新 .gitignore，添加 run.status.json；删除旧的 mapping.sh 脚本并添加新的 01.mapping.sh 脚本	2025-12-17 23:27:49 +08:00
IvisTang	0d31d42de4	Add Vercel configuration for rewrites and build settings	2025-12-17 17:47:45 +08:00
IvisTang	072524e303	20251213	2025-12-13 17:57:57 +08:00
IvisTang	eb3f16c30e	20251125	2025-11-25 00:28:51 +08:00

7 Commits