IvisTang 7f4e888e6a Add MCMCtree workflow and SNaQ analysis scripts ... - Updated `pixi.toml` to include new R package dependencies for MCMCtree workflow. - Modified markdown file to remove unnecessary simulation data discussion. - Introduced `.lintr` configuration for linting R scripts. - Created `mcmctree.ctl` control file for MCMCtree analysis. - Developed `mcmctree_workflow.r` script to orchestrate MCMCtree analysis with model testing and ESS checks. - Added `06.snaq.jl` script for SNaQ analysis with plotting capabilities. - Implemented `07.mcmctree.sh` bash script to run MCMCtree on multiple alignments in parallel.		2026-01-18 13:26:16 +08:00
..
orthology_inference	Add scripts for phylogenetic analysis using MrBayes and RAxML	2025-12-20 23:33:05 +08:00
phylogeny_reconstruction	Add MCMCtree workflow and SNaQ analysis scripts	2026-01-18 13:26:16 +08:00
plastid	更新 .gitignore，添加 run.status.json；删除旧的 mapping.sh 脚本并添加新的 01.mapping.sh 脚本	2025-12-17 23:27:49 +08:00
transcripts_assembly	Add Vercel configuration for rewrites and build settings	2025-12-17 17:47:45 +08:00