IvisTang 7f4e888e6a Add MCMCtree workflow and SNaQ analysis scripts ... - Updated `pixi.toml` to include new R package dependencies for MCMCtree workflow. - Modified markdown file to remove unnecessary simulation data discussion. - Introduced `.lintr` configuration for linting R scripts. - Created `mcmctree.ctl` control file for MCMCtree analysis. - Developed `mcmctree_workflow.r` script to orchestrate MCMCtree analysis with model testing and ESS checks. - Added `06.snaq.jl` script for SNaQ analysis with plotting capabilities. - Implemented `07.mcmctree.sh` bash script to run MCMCtree on multiple alignments in parallel.		2026-01-18 13:26:16 +08:00
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01.run_mrbayes.sh	Add scripts for phylogenetic analysis using MrBayes and RAxML	2025-12-20 23:33:05 +08:00
02.mbsum.sh	Add scripts for phylogenetic analysis using MrBayes and RAxML	2025-12-20 23:33:05 +08:00
03.run_raxml.sh	更新脚本和配置，修复 BUCKy 版本检查逻辑，调整 RAxML 脚本参数，增加 cairosvg 依赖，并更新 pixi.lock 文件以反映新依赖。	2025-12-24 09:00:15 +08:00
04.concatenate_ogs.py	Add Vercel configuration for rewrites and build settings	2025-12-17 17:47:45 +08:00
05.densitree.r	20251125	2025-11-25 00:28:51 +08:00
06.snaq.jl	Add MCMCtree workflow and SNaQ analysis scripts	2026-01-18 13:26:16 +08:00
07.mcmctree.sh	Add MCMCtree workflow and SNaQ analysis scripts	2026-01-18 13:26:16 +08:00